Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models
Figure 4
Error on as a function of sampling probability
for fixed
and
.
In (A) the relationship between the error on , i.e. estimated
/true
, and the sampling probability
is plotted. The values
and
are fixed. For different
,
, and
and
, we calculate
and
, and plot the impact on
error when changing
during inference using Equation (3) in the Supplementary Material S1. In (B) we display how error on
depends on different assumptions of
during inference for
, and
and an array of true sampling probability
used for calculating
and
.