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Understanding the Sub-Cellular Dynamics of Silicon Transportation and Synthesis in Diatoms Using Population-Level Data and Computational Optimization

Figure 4

A flowchart for finding solutions to the inverse (optimization) problem.

After designing an optimization problem, the first step is to check structural identifiability of parameters: to test if the inverse problem is solvable assuming that data are accurate and significant. After that the optimization problem should be solved (globally or locally) and at the last step posteriori analysis should be applied to ensure the results are meaningful and the model is robust. In the end, if the model can be validated, it can predict the mechanisms in the system, which, in turn, can provide a better model and, therefore, a better understanding of the system.

Figure 4

doi: https://doi.org/10.1371/journal.pcbi.1003687.g004