RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State
Figure 5
Comparison of enhancer predictions using RFECS, ChromaGenSVM, CSIANN and Chromia.
A.) In CD4. True positive rates were measured as overlap with either DNase-I hypersensitive sites (DHS), p300 or CBP binding sites, while false positives were measured as overlap with UCSC TSS. B.) In H1. True positive rates were measured as overlap with either DNase-I hypersensitive sites (DHS), p300 or transcription factor binding sites such as NANOG, OCT4 and SOX2, while false positives were measured as overlap with UCSC TSS.