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Near-Native Protein Loop Sampling Using Nonparametric Density Estimation Accommodating Sparcity

Figure 1

The 465 loop data set.

Global superposition data set of 465 loops used to test sampling. All representations are in backbone cartoon. (a) 111 target loops from CDRH1 (12 residues), (b) 130 target loops from CDRH2 (7, 8 and 10 residues), (c) 111 target loops from CDRH3 (8, 10–17 residues), (d) 21 loops from CASP9 target, T0617 (12 residues), and (e) 92 globin EF loops (12, 13 and 15 residues).

Figure 1

doi: https://doi.org/10.1371/journal.pcbi.1002234.g001