Brownian Dynamics Simulation of Nucleocytoplasmic Transport: A Coarse-Grained Model for the Functional State of the Nuclear Pore Complex
Figure 5
The nonbonded potential energies employed in the model.
a) Hydrophobic potential energy is applied between FG-beads localized to the central channel (dashed line). The same potential, a bit stronger, is applied between kap and FG-beads (solid line). b) Pairwise repulsive potential.