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Predicting Novel Binding Modes of Agonists to β Adrenergic Receptors Using All-Atom Molecular Dynamics Simulations

Figure 5

Conformations of second extracellular loop in β2AR.

Conformation of the second extracellular loop (ECL2) and of Phe193 (sticks representation) in MD simulations of unliganded β2AR (yellow), carazolol-bound β2AR (blue) and isoprenaline-bound β2AR (red). Isoprenaline and carazolol are shown in transparency. Root mean square fluctuations are shown in Figure S5 of Supplementary Information.

Figure 5

doi: https://doi.org/10.1371/journal.pcbi.1001053.g005