Multiscale Coarse-Graining of the Protein Energy Landscape
Figure 7
Backbone Cα-trace structures at the end of native state CG-MD at 0.6 for Trpzip (A), Trp-cage (B) and AdK (C).
Starting native structures are shown in cyan for Trpzip/Trp-cage and as a ribbon diagram for closed AdK. Tryptophan and proline sidechains are shown in blue (A,B). The LID/NMP domains of the AdK endpoint conformations are colored green/pink for simulations starting from open AdK and orange/blue for simulations starting from closed AdK.