Multiscale Coarse-Graining of the Protein Energy Landscape
Figure 6
The instantaneous Cα RMSD from the native state is shown for simulations starting from the native structure for Trpzip (A) and Trp-cage (B). By comparison, all-atom MD of Trpzip at 300 K yielded a mean Cα RMSD of 0.8±0.2 Å.