Insights into Protein–DNA Interactions through Structure Network Analysis
Figure 8
An overview of differences in the pattern of clusters observed due to the presence of linker in the nucleosome core particle.
The superposition of the two structures is done using Align. (Only 1aoi is represented in the above figure for clarity.) The clusters that remain unperturbed in both the structures are given in red. The new clusters that are formed due to the conformational changes mediated by the presence of the linker are given in blue. Significant P-B clusters were not seen in both the structures. The composition of the clusters in the linker region is given in Table S4.