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DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies

Figure 2

Distribution of the Observed Scores of Column-to-Column Comparisons for the Five Main Similarity Metrics

Columns are obtained from the TRANSFAC database [17]. The ALLR_LL distribution is identical to ALLR for every point ≥2 (unpublished data). Comparison of the JASPAR motif columns yielded similar results.

Figure 2

doi: https://doi.org/10.1371/journal.pcbi.0030061.g002