SNPdetector: A Software Tool for Sensitive and Accurate SNP Detection
Figure 1
Schematic Diagram of the Principal Steps in the Analysis of Sequencing Variants Found by SNPdetector
Paralellograms are analytical modules (usually C programs), and rectangles are input and output data. Programs obtained from the public domain are displayed in italics while those developed in this work are shown in bold. SNPdetector requires the following three sets of input data: (1) a template sequence file, (2) the forward and the reverse sequencing primers, and (3) the trace files. The output includes a list of high-quality SNPs and their genotype calls in each subject.