Deep learning-supported image quantification of epithelial cell shapes and its application to polycystic kidney disease

• Johannes Jahn ,

  Roles Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: johannes.jahn@uniklinik-freiburg.de (JJ); michael.koettgen@uniklinik-freiburg.de (MK)

  Affiliations Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany, Department of Radiology, Medical Center – University of Freiburg, Faculty of Medicine – University of Freiburg, Freiburg, Germany

  https://orcid.org/0000-0003-0022-1957

  ⨯
• Alexis Hofherr,

  Roles Conceptualization, Methodology, Software, Supervision

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  ⨯
• Clara Consoli,

  Roles Data curation, Investigation

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  ⨯
• Berenike Fajen,

  Roles Data curation, Investigation

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  ⨯
• Rebekka Goll,

  Roles Data curation, Investigation

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  ⨯
• Greta Theresa Liedtke,

  Roles Data curation, Investigation

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  ⨯
• Adrian Boehm,

  Roles Data curation, Investigation

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  ⨯
• Friederike Selbach,

  Roles Data curation, Investigation

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  ⨯
• Paul Christoph Zeisler,

  Roles Data curation, Investigation

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  ⨯
• Vanessa Weichselberger,

  Roles Data curation, Investigation

  Affiliations Hilde-Mangold-Haus, University of Freiburg, Freiburg, Germany, Faculty of Biology, University of Freiburg, Freiburg, Germany, CIBSS Centre for Integrative Biological Signalling Studies, University of Freiburg, Freiburg, Germany, Spemann Graduate School of Biology and Medicine (SGBM), University of Freiburg, Freiburg, Germany

  https://orcid.org/0000-0001-5220-7474

  ⨯
• Anne-Kathrin Classen,

  Roles Data curation, Supervision, Writing – review & editing

  Affiliations Hilde-Mangold-Haus, University of Freiburg, Freiburg, Germany, Faculty of Biology, University of Freiburg, Freiburg, Germany, CIBSS Centre for Integrative Biological Signalling Studies, University of Freiburg, Freiburg, Germany

  https://orcid.org/0000-0001-5157-0749

  ⨯
• Lukas Westermann,

  Roles Data curation, Methodology, Supervision, Writing – review & editing

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  https://orcid.org/0000-0002-3525-3767

  ⨯
• Tilman Busch,

  Roles Investigation, Supervision

  Affiliation Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany

  https://orcid.org/0009-0002-3890-3427

  ⨯
• Michael Köttgen

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

  * E-mail: johannes.jahn@uniklinik-freiburg.de (JJ); michael.koettgen@uniklinik-freiburg.de (MK)

  Affiliations Department of Medicine IV-Nephrology and Primary Care, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany, CIBSS Centre for Integrative Biological Signalling Studies, University of Freiburg, Freiburg, Germany

  https://orcid.org/0000-0003-2406-5039

  ⨯