Comparing subsampling strategies for efficient pairwise analysis of large pathogen genomic and spatial datasets: An application to Mycobacterium tuberculosis transmission

• Yu Lan ,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: yu.lan@yale.edu

  Affiliation Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America

  https://orcid.org/0000-0003-0373-1944

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• Chieh-Yin Wu,

  Roles Data curation, Writing – review & editing

  Affiliation College of Public Health, National Taiwan University, Taipei, Taiwan

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• Hsien-Ho Lin,

  Roles Data curation, Funding acquisition, Writing – review & editing

  Affiliation College of Public Health, National Taiwan University, Taipei, Taiwan

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• Ted Cohen ,

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Resources, Supervision, Writing – review & editing

  ¶☯ TC and JLW are Joint Senior Authors.

  Affiliation Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America

  https://orcid.org/0000-0002-8091-7198

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• Joshua L. Warren

  Roles Conceptualization, Investigation, Methodology, Software, Supervision, Validation, Writing – review & editing

  ¶☯ TC and JLW are Joint Senior Authors.

  Affiliation Department of Biostatistics, Yale School of Public Health, New Haven, Connecticut, United States of America

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