Scaffold-Lab: Critical evaluation and ranking of protein backbone generation methods in a unified framework

• Zhuoqi Zheng ,

  Contributed equally to this work with: Zhuoqi Zheng, Bo Zhang

  Roles Investigation, Methodology, Resources, Validation, Writing – original draft, Data curation

  Affiliation State Key Laboratory of Microbial metabolism, Joint International Research Laboratory of Metabolic Developmental Sciences, Department of Bioinformatics and Biostatistics, National Experimental Teaching Center for Life Sciences and Biotechnology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

  https://orcid.org/0009-0009-8058-2883

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• Bo Zhang ,

  Contributed equally to this work with: Zhuoqi Zheng, Bo Zhang

  Roles Methodology, Data curation

  Affiliation State Key Laboratory of Microbial metabolism, Joint International Research Laboratory of Metabolic Developmental Sciences, Department of Bioinformatics and Biostatistics, National Experimental Teaching Center for Life Sciences and Biotechnology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

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• Bozitao Zhong,

  Roles Methodology

  Affiliation State Key Laboratory of Microbial metabolism, Joint International Research Laboratory of Metabolic Developmental Sciences, Department of Bioinformatics and Biostatistics, National Experimental Teaching Center for Life Sciences and Biotechnology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

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• Jinyu Yu,

  Roles Methodology

  Affiliation State Key Laboratory of Microbial metabolism, Joint International Research Laboratory of Metabolic Developmental Sciences, Department of Bioinformatics and Biostatistics, National Experimental Teaching Center for Life Sciences and Biotechnology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

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• Kexin Liu,

  Roles Methodology

  Affiliation State Key Laboratory of Microbial metabolism, Joint International Research Laboratory of Metabolic Developmental Sciences, Department of Bioinformatics and Biostatistics, National Experimental Teaching Center for Life Sciences and Biotechnology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

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• Zhengxin Li,

  Roles Methodology

  Affiliation State Key Laboratory of Microbial metabolism, Joint International Research Laboratory of Metabolic Developmental Sciences, Department of Bioinformatics and Biostatistics, National Experimental Teaching Center for Life Sciences and Biotechnology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

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• Junjie Zhu,

  Roles Methodology

  Affiliation State Key Laboratory of Microbial metabolism, Joint International Research Laboratory of Metabolic Developmental Sciences, Department of Bioinformatics and Biostatistics, National Experimental Teaching Center for Life Sciences and Biotechnology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

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• Ting Wei ,

  Roles Investigation, Supervision

  * E-mail: weitinging@sjtu.edu.cn (TW); haifengchen@sjtu.edu.cn (H-FC)

  Affiliation State Key Laboratory of Microbial metabolism, Joint International Research Laboratory of Metabolic Developmental Sciences, Department of Bioinformatics and Biostatistics, National Experimental Teaching Center for Life Sciences and Biotechnology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

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• Hai-Feng Chen

  Roles Conceptualization, Funding acquisition, Supervision

  * E-mail: weitinging@sjtu.edu.cn (TW); haifengchen@sjtu.edu.cn (H-FC)

  Affiliation State Key Laboratory of Microbial metabolism, Joint International Research Laboratory of Metabolic Developmental Sciences, Department of Bioinformatics and Biostatistics, National Experimental Teaching Center for Life Sciences and Biotechnology, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

  https://orcid.org/0000-0002-7496-4182

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