HiCMamba: Enhancing Hi-C resolution and identifying 3D genome structures with state space modeling

• Minghao Yang ,

  Contributed equally to this work with: Minghao Yang, Zhi-An Huang

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Artificial Intelligence Thrust, Hong Kong University of Science and Technology (Guangzhou), Guangzhou, China

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• Zhi-An Huang ,

  Contributed equally to this work with: Minghao Yang, Zhi-An Huang

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: xionghui@ust.hk (HX); huang.za@cityu-dg.edu.cn (Z-AH); tangs3@vcu.edu (ST)

  Affiliation Department of Computer Science, City University of Hong Kong (Dongguan), Dongguan, China

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• Zhihang Zheng,

  Roles Data curation, Formal analysis

  Affiliation Bioscience and Biomedical Engineering Thrust, Hong Kong University of Science and Technology (Guangzhou), Guangzhou, China

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• Yuqiao Liu,

  Roles Data curation, Formal analysis, Validation

  Affiliation Bioscience and Biomedical Engineering Thrust, Hong Kong University of Science and Technology (Guangzhou), Guangzhou, China

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• Shichen Zhang,

  Roles Investigation, Methodology

  Affiliation Bioscience and Biomedical Engineering Thrust, Hong Kong University of Science and Technology (Guangzhou), Guangzhou, China

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• Pengfei Zhang,

  Roles Investigation, Methodology

  Affiliation Artificial Intelligence Thrust, Hong Kong University of Science and Technology (Guangzhou), Guangzhou, China

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• Hui Xiong ,

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: xionghui@ust.hk (HX); huang.za@cityu-dg.edu.cn (Z-AH); tangs3@vcu.edu (ST)

  Affiliations Artificial Intelligence Thrust, Hong Kong University of Science and Technology (Guangzhou), Guangzhou, China, Department of Computer Science and Engineering, The Hong Kong University of Science and Technology, Hong Kong SAR, China

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• Shaojun Tang

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: xionghui@ust.hk (HX); huang.za@cityu-dg.edu.cn (Z-AH); tangs3@vcu.edu (ST)

  Affiliations Department of Biostatistics, Virginia Commonwealth University, Richmond, Virginia, United States of America, Massey Comprehensive Cancer Center, Bioinformatics Shared Resource Core, Virginia Commonwealth University, Richmond, Virginia, United States of America

  https://orcid.org/0000-0002-5141-0515

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