TCR2HLA: Calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes

• Koshlan Mayer-Blackwell,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Vaccine Immunology Statistical Center, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America

  https://orcid.org/0000-0002-1652-4023

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• Anastasia Minervina,

  Roles Formal analysis, Methodology, Writing – original draft, Writing – review & editing

  Affiliation St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America

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• Mikhail Pogorelyy,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America

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• Puneet Rawat,

  Roles Data curation, Writing – review & editing

  Affiliation Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway

  https://orcid.org/0000-0002-3822-8081

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• Melanie R. Shapiro,

  Roles Data curation, Writing – review & editing

  Affiliation Department of Pathology, Immunology, and Laboratory Medicine, Diabetes Institute, College of Medicine, University of Florida, Gainesville, Florida, United States of America

  https://orcid.org/0000-0003-2090-0877

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• Leeana D. Peters,

  Roles Data curation, Writing – review & editing

  Affiliation Department of Pathology, Immunology, and Laboratory Medicine, Diabetes Institute, College of Medicine, University of Florida, Gainesville, Florida, United States of America

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• Emily S. Ford,

  Roles Data curation, Writing – review & editing

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Medicine, University of Washington, Seattle, Washington, United States of America

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• Amanda L. Posgai,

  Roles Writing – review & editing

  Affiliation Department of Pathology, Immunology, and Laboratory Medicine, Diabetes Institute, College of Medicine, University of Florida, Gainesville, Florida, United States of America

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• Kasi Vegesana,

  Roles Validation, Writing – review & editing

  Affiliation St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America

  https://orcid.org/0000-0001-8847-3774

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• Samuel Minot,

  Roles Software, Writing – review & editing

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Vaccine Immunology Statistical Center, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America

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• David M. Koelle,

  Roles Data curation, Funding acquisition, Writing – review & editing

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Medicine, University of Washington, Seattle, Washington, United States of America, Department of Global Health, University of Washington, Seattle, Washington, United States of America, Benaroya Research Institute, Seattle, Washington, United States of America, Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America

  https://orcid.org/0000-0003-1255-9023

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• Victor Greiff,

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  Affiliations Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway, Imprint Labs, LLC., New York, New York, United States of America

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• Philip Bradley,

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  Affiliation Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America

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• Todd M. Brusko,

  Roles Funding acquisition, Supervision, Writing – review & editing

  Affiliations Department of Pathology, Immunology, and Laboratory Medicine, Diabetes Institute, College of Medicine, University of Florida, Gainesville, Florida, United States of America, Department of Pediatrics, Diabetes Institute, College of Medicine, University of Florida, Gainesville, Florida, United States of America, Department of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, Florida, United States of America

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• Paul G. Thomas,

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  Affiliation St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America

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•  [ ... ],
• Andrew Fiore-Gartland

  Roles Conceptualization, Formal analysis, Methodology, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: agartlan@fredhutch.org

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Vaccine Immunology Statistical Center, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America

  https://orcid.org/0000-0001-7627-2166

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