Unsupervised detection and fitness estimation of emerging SARS-CoV-2 variants: Application to wastewater samples (ANRS0160)

• Alexandra Lefebvre ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: alexandra.lefebvre@math.cnrs.fr

  Affiliations Sorbonne Université, Université Paris Cité, CNRS, Laboratoire Jacques-Louis Lions, LJLL, Paris, France, Stochastic Models for the Inference of Life Evolution (SMILE), Center for Interdisciplinary Research in Biology (CIRB), Collège de France, CNRS UMR, INSERM U1050, PSL Université, Paris, France

  https://orcid.org/0009-0006-9301-5552

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• Vincent Maréchal,

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliation Sorbonne Université, INSERM, Centre de Recherche Saint-Antoine (CRSA), UMR_S, Paris, France

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• Arnaud Gloaguen,

  Roles Data curation, Writing – review & editing

  Affiliation Centre National de Recherche en Génomique Humaine, Institut de Biologie François Jacob, CEA, Université Paris-Saclay, Évry, France

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• The Obépine Consortium ,

  Roles Conceptualization, Funding acquisition

  ¶‡ These authors contributed equally to this work.

  Affiliation Faculté des sciences, Sorbonne Université, Paris, France

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• Amaury Lambert ,

  Contributed equally to this work with: Amaury Lambert, Yvon Maday

  Roles Conceptualization, Methodology, Supervision, Writing – review & editing

  Affiliations Stochastic Models for the Inference of Life Evolution (SMILE), Center for Interdisciplinary Research in Biology (CIRB), Collège de France, CNRS UMR, INSERM U1050, PSL Université, Paris, France, Institut de Biologie de l’ENS (IBENS), École Normale Supérieure, CNRS UMR, INSERM U1024, PSL Université, Paris, France

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• Yvon Maday

  Contributed equally to this work with: Amaury Lambert, Yvon Maday

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Supervision, Writing – review & editing

  Affiliation Sorbonne Université, Université Paris Cité, CNRS, Laboratoire Jacques-Louis Lions, LJLL, Paris, France

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