T-shaped alignments integrating HIV-1 near full-length genome and partial pol sequences can improve phylogenetic inference of transmission clusters

• August Guang ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: august_guang@brown.edu

  Affiliation Center for Computation and Visualization, Brown University, Providence, Rhode Island, United States of America

  https://orcid.org/0000-0003-4974-1873

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• Casey W Dunn,

  Roles Conceptualization, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America

  https://orcid.org/0000-0003-0628-5150

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• Vlad Novitsky,

  Roles Conceptualization, Writing – review & editing

  Affiliation Warren Alpert Medical School, Brown University, Providence, Rhode Island, United States of America

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• Mark Howison,

  Roles Conceptualization, Writing – review & editing

  Affiliation Research Improving Peoples’ Lives, Providence, Rhode Island, United States of America

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• Rami Kantor

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliation Warren Alpert Medical School, Brown University, Providence, Rhode Island, United States of America

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