Surrogate modeling of Cellular-Potts agent-based models as a segmentation task using the U-Net neural network architecture

• Tien Comlekoglu,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America, Department of Cell Biology, University of Virginia, Charlottesville, Virginia, United States of America

  https://orcid.org/0000-0002-8314-2703

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• J. Quetzalcóatl Toledo-Marín,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations TRIUMF, Vancouver, British Columbia, Canada, Perimeter Institute for Theoretical Physics, Waterloo, Ontario, Canada

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• Tina Comlekoglu,

  Roles Data curation, Formal analysis, Methodology, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Beirne B. Carter Center for Immunology Research, University of Virginia, Charlottesville, Virginia, United States of America

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• Douglas W. DeSimone,

  Roles Funding acquisition, Project administration, Resources, Supervision

  Affiliation Department of Cell Biology, University of Virginia, Charlottesville, Virginia, United States of America

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• Shayn M. Peirce,

  Roles Funding acquisition, Project administration, Resources, Supervision

  Affiliation Department of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America

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• Geoffrey Fox,

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Writing – original draft, Writing – review & editing

  Affiliation Biocomplexity Institute and the Department of Computer Science, University of Virginia, Charlottesville, Virginia, United States of America

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• James A. Glazier

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: glazier@iu.edu

  Affiliation Department of Intelligent Systems Engineering, Indiana University, Bloomington, Indiana, United States of America

  https://orcid.org/0000-0003-3634-190X

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