Reconstructing noisy gene regulation dynamics using extrinsic-noise-driven neural stochastic differential equations

• Jiancheng Zhang ,

  Contributed equally to this work with: Jiancheng Zhang, Xiangting Li, Xiaolu Guo

  Roles Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Electrical and Computer Engineering, University of California, Riverside, California, United States of America

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• Xiangting Li ,

  Contributed equally to this work with: Jiancheng Zhang, Xiangting Li, Xiaolu Guo

  Roles Formal analysis, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Computational Medicine, University of California, Los Angeles, California, United States of America

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• Xiaolu Guo ,

  Contributed equally to this work with: Jiancheng Zhang, Xiangting Li, Xiaolu Guo

  Roles Investigation, Resources, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: xiaoluguo@g.ucla.edu (XG); tomchou@ucla.edu (TC); mxia4@uh.edu (MX)

  Affiliation Department of Microbiology, Immunology, and Molecular Genetics (MIMG) and Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, California, United States of America

  https://orcid.org/0000-0002-5740-2428

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• Zhaoyi You,

  Roles Investigation, Writing – original draft, Writing – review & editing

  Affiliation Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

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• Lucas Böttcher,

  Roles Funding acquisition, Investigation, Resources, Writing – review & editing

  Affiliations Department of Computational Science and Philosophy, Frankfurt School of Finance and Management, Frankfurt am Main, Germany, Laboratory for Systems Medicine, Department of Medicine, University of Florida, Gainesville, Florida, United States of America

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• Alex Mogilner,

  Roles Investigation, Writing – review & editing

  Affiliation Courant Institute of Mathematical Sciences, New York University, New York, New York, United States of America

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• Alexander Hoffmann,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Microbiology, Immunology, and Molecular Genetics (MIMG) and Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, California, United States of America

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• Tom Chou ,

  Roles Funding acquisition, Investigation, Software, Visualization, Writing – review & editing

  * E-mail: xiaoluguo@g.ucla.edu (XG); tomchou@ucla.edu (TC); mxia4@uh.edu (MX)

  Affiliations Department of Computational Medicine, University of California, Los Angeles, California, United States of America, Department of Mathematics, University of California, Los Angeles, California, United States of America

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• Mingtao Xia

  Roles Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: xiaoluguo@g.ucla.edu (XG); tomchou@ucla.edu (TC); mxia4@uh.edu (MX)

  Affiliation Department of Mathematics, University of Houston, Houston, Texas, United States of America

  https://orcid.org/0000-0002-2116-4712

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