The R-loop grammar predicts R-loop formation under different topological constraints

• Margherita Maria Ferrari,

  Roles Formal analysis, Investigation, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliation Department of Mathematics, University of Manitoba, Winnipeg, Manitoba, Canada

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• Svetlana Poznanović,

  Roles Conceptualization, Investigation, Methodology, Validation, Writing – original draft

  Affiliation Department of Mathematical and Statistical Sciences, Clemson University, Clemson, South Carolina, United States of America

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• Manda Riehl,

  Roles Conceptualization, Formal analysis, Validation, Writing – original draft

  Affiliation Department of Mathematics, Rose-Hulman Institute of Technology, Terre Haute, Indiana, United States of America

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• Jacob Lusk,

  Roles Investigation, Software, Validation, Visualization

  Affiliation Department of Microbiology and Molecular Genetics, University of California Davis, Davis, California, United States of America

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• Stella Hartono,

  Roles Data curation

  Affiliation Department of Molecular and Cellular Biology, University of California Davis, Davis, California, United States of America

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• Georgina Gonzalez-Isunza,

  Roles Methodology, Validation, Writing – review & editing

  Affiliation Department of Microbiology and Molecular Genetics, University of California Davis, Davis, California, United States of America

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• Frédéric Chédin,

  Roles Funding acquisition, Resources, Supervision

  Affiliation Department of Molecular and Cellular Biology, University of California Davis, Davis, California, United States of America

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• Mariel Vázquez ,

  Roles Conceptualization, Formal analysis, Investigation, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: mrlvazquez@ucdavis.edu (MV); jonoska@usf.edu (NJ)

  Affiliations Department of Microbiology and Molecular Genetics, University of California Davis, Davis, California, United States of America, Department of Mathematics, University of California Davis, Davis, California, United States of America

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• Nataša Jonoska

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Project administration, Supervision, Validation, Writing – original draft, Writing – review & editing

  * E-mail: mrlvazquez@ucdavis.edu (MV); jonoska@usf.edu (NJ)

  Affiliation Department of Mathematics and Statistics, University of South Florida, Tampa, Florida, United States of America

  https://orcid.org/0000-0003-0765-9425

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