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Open Access
Peer-reviewed
Research Article
The challenge of chromatin model comparison and validation: A project from the first international 4D Nucleome Hackathon
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Jędrzej Kubica ,
Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Writing – original draft, Writing – review & editing
¶‡ These authors should be regarded as co-first authors.
Affiliations Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw, Warsaw, Poland, Univ. Grenoble Alpes, CNRS, UMR, TIMC/ MAGe, Grenoble, France
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Sevastianos Korsak ,
Roles Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing
¶‡ These authors should be regarded as co-first authors.
Affiliations Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw, Warsaw, Poland, Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland
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Krzysztof H. Banecki,
Roles Conceptualization, Visualization, Writing – original draft, Writing – review & editing
Affiliations Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw, Warsaw, Poland, Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland
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Dvir Schirman,
Roles Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing
Affiliation Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
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Anurupa Devi Yadavalli,
Roles Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing
Affiliation Department of Immunobiology, School of Medicine, Yale University, New Haven, Connecticut, United States of America
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Ariana Brenner Clerkin,
Roles Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing
Affiliations Laboratory of Genome Architecture and Dynamics, The Rockefeller University, New York, New York, United States of America, Tri-Institutional PhD Program in Computational Biology and Medicine, New York, New York, United States of America
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David Kouřil,
Roles Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing
Affiliation Department of Biomedical Informatics, Harvard Medical School, Boston, Maryland, United States of America
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Michał Kadlof,
Roles Conceptualization, Supervision, Visualization, Writing – original draft, Writing – review & editing
Affiliation Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland
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Ben Busby,
Roles Conceptualization, Supervision, Writing – review & editing
Affiliation DNAnexus, Mountain View, California, United States of America
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Dariusz Plewczynski
Roles Conceptualization, Funding acquisition, Resources, Supervision, Writing – review & editing
* E-mail: Dariusz.Plewczynski@pw.edu.pl, d.plewczynski@cent.uw.edu.pl
Affiliations Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw, Warsaw, Poland, Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland
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The challenge of chromatin model comparison and validation: A project from the first international 4D Nucleome Hackathon
- Jędrzej Kubica,
- Sevastianos Korsak,
- Krzysztof H. Banecki,
- Dvir Schirman,
- Anurupa Devi Yadavalli,
- Ariana Brenner Clerkin,
- David Kouřil,
- Michał Kadlof,
- Ben Busby,
- Dariusz Plewczynski
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- Published: August 19, 2025
- https://doi.org/10.1371/journal.pcbi.1013358