SpaMask: Dual masking graph autoencoder with contrastive learning for spatial transcriptomics

• Wenwen Min ,

  Contributed equally to this work with: Wenwen Min, Donghai Fang

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: minwenwen@ynu.edu.cn

  Affiliation School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China

  https://orcid.org/0000-0002-2558-2911

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• Donghai Fang ,

  Contributed equally to this work with: Wenwen Min, Donghai Fang

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China

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• Jinyu Chen,

  Roles Conceptualization, Funding acquisition, Investigation, Writing – review & editing

  Affiliation School of Mathematics, Statistics and Mechanics, Beijing University of Technology, Beijing, China

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• Shihua Zhang

  Roles Conceptualization, Investigation, Writing – review & editing

  Affiliations NCMIS, CEMS, RCSDS, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China, School of Mathematical Sciences, University of Chinese Academy of Sciences, Beijing, China, Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, Zhejiang, China

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