scGRN-Entropy: Inferring cell differentiation trajectories using single-cell data and gene regulation network-based transfer entropy

Rui Sun; Wenjie Cao; ShengXuan Li; Jian Jiang; Yazhou Shi; Bengong Zhang

doi:10.1371/journal.pcbi.1012638

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Open Access

Peer-reviewed

Research Article

scGRN-Entropy: Inferring cell differentiation trajectories using single-cell data and gene regulation network-based transfer entropy

Rui Sun,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliations School of Mathematical & Physical Sciences, Wuhan Textile University, Wuhan, Hubei, China, Center for Applied Mathematics and Interdisciplinary Studies, Wuhan Textile University, Wuhan, Hubei, China
⨯
Wenjie Cao,

Roles Data curation, Software

Affiliation School of Mathematics, Sun Yat-sen University, Guangzhou, Guangdong, China
⨯
ShengXuan Li,

Roles Data curation, Investigation, Methodology, Visualization

Affiliations School of Mathematical & Physical Sciences, Wuhan Textile University, Wuhan, Hubei, China, Center for Applied Mathematics and Interdisciplinary Studies, Wuhan Textile University, Wuhan, Hubei, China
⨯
Jian Jiang,

Roles Formal analysis, Project administration, Resources, Software, Validation

Affiliations School of Mathematical & Physical Sciences, Wuhan Textile University, Wuhan, Hubei, China, Center for Applied Mathematics and Interdisciplinary Studies, Wuhan Textile University, Wuhan, Hubei, China
⨯
Yazhou Shi ,

Roles Methodology, Project administration, Validation, Writing – review & editing

* E-mail: yzshi@wtu.edu.cn (YS); benyan1219@126.com (BZ)

Affiliations School of Mathematical & Physical Sciences, Wuhan Textile University, Wuhan, Hubei, China, Center for Applied Mathematics and Interdisciplinary Studies, Wuhan Textile University, Wuhan, Hubei, China

https://orcid.org/0000-0003-2579-3134

⨯
Bengong Zhang

Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Validation, Writing – original draft, Writing – review & editing

* E-mail: yzshi@wtu.edu.cn (YS); benyan1219@126.com (BZ)

Affiliations School of Mathematical & Physical Sciences, Wuhan Textile University, Wuhan, Hubei, China, Center for Applied Mathematics and Interdisciplinary Studies, Wuhan Textile University, Wuhan, Hubei, China

https://orcid.org/0000-0002-2766-6502

⨯

scGRN-Entropy: Inferring cell differentiation trajectories using single-cell data and gene regulation network-based transfer entropy

Rui Sun,
Wenjie Cao,
ShengXuan Li,
Jian Jiang,
Yazhou Shi,
Bengong Zhang

Published: November 25, 2024
https://doi.org/10.1371/journal.pcbi.1012638

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Cell differentiation
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Gene expression
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Gene regulation
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Entropy
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Algorithms
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Gene regulatory networks
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Graph theory
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Cell cycle and cell division
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