Prediction of virus-host associations using protein language models and multiple instance learning

Dan Liu; Francesca Young; Kieran D. Lamb; David L. Robertson; Ke Yuan

doi:10.1371/journal.pcbi.1012597

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Open Access

Peer-reviewed

Research Article

Prediction of virus-host associations using protein language models and multiple instance learning

Dan Liu,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation MRC−University of Glasgow Centre for Virus Research, Glasgow, United Kingdom
⨯
Francesca Young,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliations MRC−University of Glasgow Centre for Virus Research, Glasgow, United Kingdom, School of Computing Science, University of Glasgow, Glasgow, United Kingdom
⨯
Kieran D. Lamb,

Roles Formal analysis, Methodology, Software, Validation, Visualization, Writing – review & editing

Affiliation MRC−University of Glasgow Centre for Virus Research, Glasgow, United Kingdom

https://orcid.org/0000-0002-3011-5189

⨯
David L. Robertson ,

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: david.l.robertson@glasgow.ac.uk (DLR); ke.yuan@glasgow.ac.uk (KY)

Affiliation MRC−University of Glasgow Centre for Virus Research, Glasgow, United Kingdom
⨯
Ke Yuan

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: david.l.robertson@glasgow.ac.uk (DLR); ke.yuan@glasgow.ac.uk (KY)

Affiliations School of Computing Science, University of Glasgow, Glasgow, United Kingdom, School of Cancer Sciences, University of Glasgow, Glasgow, United Kingdom, Cancer Research UK Scotland Institute, Glasgow, United Kingdom

https://orcid.org/0000-0002-2318-1460

⨯

Prediction of virus-host associations using protein language models and multiple instance learning

Dan Liu,
Francesca Young,
Kieran D. Lamb,
David L. Robertson,
Ke Yuan

Published: November 19, 2024
https://doi.org/10.1371/journal.pcbi.1012597

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