pyPAGE: A framework for Addressing biases in gene-set enrichment analysis—A case study on Alzheimer’s disease

• Artemy Bakulin,

  Roles Conceptualization, Data curation, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia

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• Noam B. Teyssier,

  Roles Software

  Affiliation Institute for Neurodegenerative Diseases, University of California San Francisco, California, United States of America

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• Martin Kampmann,

  Roles Conceptualization, Writing – review & editing

  Affiliations Institute for Neurodegenerative Diseases, University of California San Francisco, California, United States of America, Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America

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• Matvei Khoroshkin ,

  Roles Conceptualization, Methodology, Software, Validation, Writing – original draft

  * E-mail: matvei.khoroshkin@ucsf.edu; hani.goodarzi@ucsf.edu

  Affiliations Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America, Department of Urology, University of California San Francisco, San Francisco, California, United States of America, Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California, United States of America, Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, California, United States of America

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• Hani Goodarzi

  Roles Conceptualization, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: matvei.khoroshkin@ucsf.edu; hani.goodarzi@ucsf.edu

  Affiliations Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, United States of America, Department of Urology, University of California San Francisco, San Francisco, California, United States of America, Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California, United States of America, Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, California, United States of America, Arc Institute, Palo Alto, California, United States of America

  https://orcid.org/0000-0002-9648-8949

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