nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework

• Gisela Gabernet ,

  Contributed equally to this work with: Gisela Gabernet, Susanna Marquez

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Software, Writing – original draft, Writing – review & editing

  * E-mail: gisela.gabernet@yale.edu

  Affiliations Department of Pathology, Yale School of Medicine, New Haven, Connecticut, United States of America, Quantitative Biology Center, Eberhard-Karls University of Tübingen, Tübingen, Germany

  https://orcid.org/0000-0001-7049-9474

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• Susanna Marquez ,

  Contributed equally to this work with: Gisela Gabernet, Susanna Marquez

  Roles Conceptualization, Formal analysis, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliation Department of Pathology, Yale School of Medicine, New Haven, Connecticut, United States of America

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• Robert Bjornson,

  Roles Methodology, Writing – review & editing

  Affiliation Yale Center for Research Computing, New Haven, Connecticut, United States of America

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• Alexander Peltzer,

  Roles Software, Writing – review & editing

  Affiliation Boehringer Ingelheim Pharma GmbH & Co. KG, Biberach, Germany

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• Hailong Meng,

  Roles Software, Writing – review & editing

  Affiliation Department of Pathology, Yale School of Medicine, New Haven, Connecticut, United States of America

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• Edel Aron,

  Roles Software, Writing – review & editing

  Affiliation Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

  https://orcid.org/0000-0002-8683-4772

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• Noah Y. Lee,

  Roles Software, Writing – review & editing

  Affiliation Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

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• Cole G. Jensen,

  Roles Software, Writing – review & editing

  Affiliation Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

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• David Ladd,

  Roles Software, Writing – review & editing

  Affiliation oNKo-Innate Pty Ltd, Melbourne, Victoria, Australia

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• Mark Polster,

  Roles Software, Writing – review & editing

  Affiliations Quantitative Biology Center, Eberhard-Karls University of Tübingen, Tübingen, Germany, Department of Computer Science, Eberhard-Karls University of Tübingen, Tübingen, Germany, M3 Research Center, University Hospital, Tübingen, Germany

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• Friederike Hanssen,

  Roles Software, Writing – review & editing

  Affiliations Quantitative Biology Center, Eberhard-Karls University of Tübingen, Tübingen, Germany, Department of Computer Science, Eberhard-Karls University of Tübingen, Tübingen, Germany, M3 Research Center, University Hospital, Tübingen, Germany

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• Simon Heumos,

  Roles Software, Writing – review & editing

  Affiliations Quantitative Biology Center, Eberhard-Karls University of Tübingen, Tübingen, Germany, Department of Computer Science, Eberhard-Karls University of Tübingen, Tübingen, Germany, M3 Research Center, University Hospital, Tübingen, Germany

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• nf-core community ,

  ¶Membership of ‘nf-core community’ is provided in the Acknowledgements.

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• Gur Yaari,

  Roles Supervision, Writing – review & editing

  Affiliation Faculty of Engineering, Bar Ilan University, Ramat Gan, Israel

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• Markus C. Kowarik,

  Roles Supervision, Writing – review & editing

  Affiliations Department of Neurology and Stroke, Center for Neurology, Eberhard-Karls University of Tübingen, Tübingen, Germany, Hertie Institute for Clinical Brain Research, Eberhard-Karls University of Tübingen, Tübingen, Germany

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• Sven Nahnsen ,

  Roles Funding acquisition, Supervision, Writing – original draft, Writing – review & editing

  ¶‡ These authors are joint senior authors on this work.

  Affiliations Quantitative Biology Center, Eberhard-Karls University of Tübingen, Tübingen, Germany, Department of Computer Science, Eberhard-Karls University of Tübingen, Tübingen, Germany, M3 Research Center, University Hospital, Tübingen, Germany, Institute for Bioinformatics and Medical Informatics (IBMI), Eberhard-Karls University of Tübingen, Tübingen, Germany

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•  [ ... ],
• Steven H. Kleinstein

  Roles Funding acquisition, Methodology, Supervision, Writing – original draft, Writing – review & editing

  ¶‡ These authors are joint senior authors on this work.

  Affiliations Department of Pathology, Yale School of Medicine, New Haven, Connecticut, United States of America, Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America, Department of Immunobiology, Yale School of Medicine, New Haven, Connecticut, United States of America

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