Pairtools: From sequencing data to chromosome contacts

• Open2C ,

  * E-mail: open.chromosome.collective@gmail.com; ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG)

  Affiliation https://open2c.github.io/

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• Nezar Abdennur,

  Roles Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing

  Affiliations Program in Bioinformatics and Integrative Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, United States of America, Department of Systems Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, United States of America

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• Geoffrey Fudenberg,

  Roles Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing

  Affiliation Department of Computational and Quantitative Biology, University of Southern California, Los Angeles, California, United States of America

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• Ilya M. Flyamer ,

  Roles Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing

  * E-mail: open.chromosome.collective@gmail.com; ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG)

  Affiliation Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland

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• Aleksandra A. Galitsyna ,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: open.chromosome.collective@gmail.com; ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG)

  Affiliations Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America, Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Vienna, Austria

  https://orcid.org/0000-0001-8969-5694

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• Anton Goloborodko ,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: open.chromosome.collective@gmail.com; ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG)

  Affiliation Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Vienna, Austria

  https://orcid.org/0000-0002-2210-8616

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• Maxim Imakaev,

  Roles Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing

  Affiliation Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America

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• Sergey V. Venev

  Roles Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing

  Affiliation Department of Systems Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, United States of America

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