Cooltools: Enabling high-resolution Hi-C analysis in Python

• Open2C ,

  * E-mail: open.chromosome.collective@gmail.com (O2C); nezar.abdennur@umassmed.edu (NA); fudenber@usc.edu (GF); ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG); serrgeyv.venev@umassmed.edu (SVV)

  Affiliation https://open2c.github.io/

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• Nezar Abdennur ,

  Roles Conceptualization, Investigation, Methodology, Software, Writing – review & editing

  * E-mail: open.chromosome.collective@gmail.com (O2C); nezar.abdennur@umassmed.edu (NA); fudenber@usc.edu (GF); ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG); serrgeyv.venev@umassmed.edu (SVV)

  Affiliations Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, United States of America, Department of Systems Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, United States of America

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• Sameer Abraham,

  Roles Software

  Affiliation Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America

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• Geoffrey Fudenberg ,

  Roles Conceptualization, Investigation, Methodology, Software, Writing – original draft, Writing – review & editing

  * E-mail: open.chromosome.collective@gmail.com (O2C); nezar.abdennur@umassmed.edu (NA); fudenber@usc.edu (GF); ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG); serrgeyv.venev@umassmed.edu (SVV)

  Affiliation Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, California, United States of America

  https://orcid.org/0000-0001-5905-6517

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• Ilya M. Flyamer ,

  Roles Conceptualization, Investigation, Methodology, Software, Writing – review & editing

  * E-mail: open.chromosome.collective@gmail.com (O2C); nezar.abdennur@umassmed.edu (NA); fudenber@usc.edu (GF); ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG); serrgeyv.venev@umassmed.edu (SVV)

  Affiliation Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland

  https://orcid.org/0000-0002-4892-4208

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• Aleksandra A. Galitsyna ,

  Roles Conceptualization, Investigation, Methodology, Writing – review & editing

  * E-mail: open.chromosome.collective@gmail.com (O2C); nezar.abdennur@umassmed.edu (NA); fudenber@usc.edu (GF); ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG); serrgeyv.venev@umassmed.edu (SVV)

  Affiliation Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America

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• Anton Goloborodko ,

  Roles Conceptualization, Methodology, Software, Writing – review & editing

  * E-mail: open.chromosome.collective@gmail.com (O2C); nezar.abdennur@umassmed.edu (NA); fudenber@usc.edu (GF); ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG); serrgeyv.venev@umassmed.edu (SVV)

  Affiliation Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Vienna, Austria

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• Maxim Imakaev,

  Roles Conceptualization, Software

  Affiliation Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America

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• Betul A. Oksuz,

  Roles Software

  Affiliation Department of Systems Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, United States of America

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• Sergey V. Venev ,

  Roles Conceptualization, Investigation, Methodology, Software, Writing – review & editing

  * E-mail: open.chromosome.collective@gmail.com (O2C); nezar.abdennur@umassmed.edu (NA); fudenber@usc.edu (GF); ilia.fliamer@fmi.ch (IMF); galitsyn@mit.edu (AAG); anton.goloborodko@imba.oeaw.ac.at (AG); serrgeyv.venev@umassmed.edu (SVV)

  Affiliation Department of Systems Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, United States of America

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• Yao Xiao

  Roles Investigation, Methodology, Software

  Affiliation Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, California, United States of America

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