teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering

• Søren D. Petersen ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Writing – original draft

  ¶‡ These authors share first authorship on this work.

  Affiliation Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark

  https://orcid.org/0000-0003-4104-5144

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• Lucas Levassor ,

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Writing – original draft, Writing – review & editing

  ¶‡ These authors share first authorship on this work.

  Affiliations Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark, Department of Biotechnology and Biomedicine, Technical University of Denmark, Kgs. Lyngby, Denmark

  https://orcid.org/0000-0002-3261-9911

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• Christine M. Pedersen,

  Roles Data curation, Formal analysis, Methodology, Visualization

  Affiliation Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark

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• Jan Madsen,

  Roles Funding acquisition, Methodology

  Affiliation Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark

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• Lea G. Hansen,

  Roles Data curation, Investigation, Supervision

  Affiliation Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark

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• Jie Zhang,

  Roles Data curation, Supervision, Writing – review & editing

  Affiliation Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark

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• Ahmad K. Haidar,

  Roles Data curation, Formal analysis, Methodology

  Affiliation Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark

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• Rasmus J. N. Frandsen,

  Roles Funding acquisition, Project administration, Supervision

  Affiliation Department of Biotechnology and Biomedicine, Technical University of Denmark, Kgs. Lyngby, Denmark

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• Jay D. Keasling,

  Roles Funding acquisition, Writing – review & editing

  Affiliations Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark, Joint BioEnergy Institute, Emeryville, California, United States of America, Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Department of Chemical and Biomolecular Engineering, Department of Bioengineering, University of California, Berkeley, California, United States of America, Center for Synthetic Biochemistry, Institute for Synthetic Biology, Shenzhen Institutes of Advanced Technologies, Shenzhen, China

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• Tilmann Weber,

  Roles Supervision, Writing – review & editing

  Affiliation Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark

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• Nikolaus Sonnenschein,

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Software, Writing – review & editing

  Current address: Ginkgo Bioworks, Boston, Massachusetts, United States of America

  Affiliation Department of Biotechnology and Biomedicine, Technical University of Denmark, Kgs. Lyngby, Denmark

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• Michael K. Jensen

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: mije@biosustain.dtu.dk

  Affiliation Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark

  https://orcid.org/0000-0001-7574-4707

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