HGCLAMIR: Hypergraph contrastive learning with attention mechanism and integrated multi-view representation for predicting miRNA-disease associations

Dong Ouyang; Yong Liang; Jinfeng Wang; Le Li; Ning Ai; Junning Feng; Shanghui Lu; Shuilin Liao; Xiaoying Liu; Shengli Xie

doi:10.1371/journal.pcbi.1011927

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Open Access

Peer-reviewed

HGCLAMIR: Hypergraph contrastive learning with attention mechanism and integrated multi-view representation for predicting miRNA-disease associations

Dong Ouyang,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliations Peng Cheng Laboratory, Shenzhen, China, School of Biomedical Engineering, Guangdong Medical University, Dongguan, China
⨯
Yong Liang ,

Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

* E-mail: yongliangresearch@gmail.com

Affiliations Peng Cheng Laboratory, Shenzhen, China, Pazhou Laboratory (Huangpu), Guangzhou, China

https://orcid.org/0000-0003-2403-1971

⨯
Jinfeng Wang,

Roles Formal analysis, Resources

Affiliation College of Mathematics and Informatics, South China Agricultural University, Guangzhou, China
⨯
Le Li,

Roles Formal analysis, Software

Affiliation School of Computer Science and Engineering, Faculty of Innovation Engineering, Macau University of Science and Technology, Macau, China
⨯
Ning Ai,

Roles Data curation, Visualization

Affiliation School of Computer Science and Engineering, Faculty of Innovation Engineering, Macau University of Science and Technology, Macau, China
⨯
Junning Feng,

Roles Methodology

Affiliation School of Computer Science and Engineering, Faculty of Innovation Engineering, Macau University of Science and Technology, Macau, China
⨯
Shanghui Lu,

Roles Investigation

Affiliation School of Computer Science and Engineering, Faculty of Innovation Engineering, Macau University of Science and Technology, Macau, China
⨯
Shuilin Liao,

Roles Validation

Affiliation School of Computer Science and Engineering, Faculty of Innovation Engineering, Macau University of Science and Technology, Macau, China
⨯
Xiaoying Liu,

Roles Investigation, Resources

Affiliation Computer Engineering Technical College, Guangdong Polytechnic of Science and Technology, Zhuhai, China
⨯
Shengli Xie

Roles Validation

Affiliation Guangdong-HongKong-Macao Joint Laboratory for Smart Discrete Manufacturing, Guangzhou, China
⨯

HGCLAMIR: Hypergraph contrastive learning with attention mechanism and integrated multi-view representation for predicting miRNA-disease associations

Dong Ouyang,
Yong Liang,
Jinfeng Wang,
Le Li,
Ning Ai,
Junning Feng,
Shanghui Lu,
Shuilin Liao,
Xiaoying Liu,
Shengli Xie

Published: April 23, 2024
https://doi.org/10.1371/journal.pcbi.1011927

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