MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface

• Adam Husar,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Writing – original draft, Writing – review & editing

  Affiliation Computational Neurobiology Lab, Salk Institute for Biological Studies, La Jolla, California, United States of America

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• Mariam Ordyan,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Institute for Neural Computations, University of California, San Diego, La Jolla, California, United States of America

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• Guadalupe C. Garcia,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Computational Neurobiology Lab, Salk Institute for Biological Studies, La Jolla, California, United States of America

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• Joel G. Yancey,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – review & editing

  Affiliation Computational Neurobiology Lab, Salk Institute for Biological Studies, La Jolla, California, United States of America

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• Ali S. Saglam,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – review & editing

  Affiliation Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

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• James R. Faeder,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing – review & editing

  Affiliation Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

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• Thomas M. Bartol ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: bartol@salk.edu

  Affiliation Computational Neurobiology Lab, Salk Institute for Biological Studies, La Jolla, California, United States of America

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• Mary B. Kennedy,

  Roles Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Validation, Writing – review & editing

  Affiliation Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America

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• Terrence J. Sejnowski

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Writing – review & editing

  Affiliations Computational Neurobiology Lab, Salk Institute for Biological Studies, La Jolla, California, United States of America, Institute for Neural Computations, University of California, San Diego, La Jolla, California, United States of America

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