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Open Access
Peer-reviewed
Research Article
The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples
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Tim H. Heupink ,
Contributed equally to this work with: Tim H. Heupink, Lennert Verboven, Abhinav Sharma
Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: Tim.Heupink@uantwerpen.be
Affiliation TORCH Consortium, Global Health Institute, Faculty of Medicine and Health Sciences, University of Antwerp, Antwerp, Belgium
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Lennert Verboven ,
Contributed equally to this work with: Tim H. Heupink, Lennert Verboven, Abhinav Sharma
Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing
Affiliations TORCH Consortium, Global Health Institute, Faculty of Medicine and Health Sciences, University of Antwerp, Antwerp, Belgium, ADReM Data Lab, Department of Computer Science, University of Antwerp, Antwerp, Belgium
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Abhinav Sharma ,
Contributed equally to this work with: Tim H. Heupink, Lennert Verboven, Abhinav Sharma
Roles Data curation, Investigation, Resources, Software, Validation, Writing – original draft, Writing – review & editing
Affiliation SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa
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Vincent Rennie,
Roles Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
Affiliation TORCH Consortium, Global Health Institute, Faculty of Medicine and Health Sciences, University of Antwerp, Antwerp, Belgium
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Miguel de Diego Fuertes,
Roles Data curation, Formal analysis, Investigation, Validation, Visualization
Affiliation TORCH Consortium, Global Health Institute, Faculty of Medicine and Health Sciences, University of Antwerp, Antwerp, Belgium
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Robin M. Warren,
Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing
Affiliation SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa
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Annelies Van Rie
Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing
Affiliation TORCH Consortium, Global Health Institute, Faculty of Medicine and Health Sciences, University of Antwerp, Antwerp, Belgium
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The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples
- Tim H. Heupink,
- Lennert Verboven,
- Abhinav Sharma,
- Vincent Rennie,
- Miguel de Diego Fuertes,
- Robin M. Warren,
- Annelies Van Rie
- Published: November 29, 2023
- https://doi.org/10.1371/journal.pcbi.1011648