Quantifying massively parallel microbial growth with spatially mediated interactions

Florian Borse; Dovydas Kičiatovas; Teemu Kuosmanen; Mabel Vidal; Guillermo Cabrera-Vives; Johannes Cairns; Jonas Warringer; Ville Mustonen

doi:10.1371/journal.pcbi.1011585

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Open Access

Peer-reviewed

Research Article

Quantifying massively parallel microbial growth with spatially mediated interactions

Florian Borse,

Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Writing – original draft

Affiliation Organismal and Evolutionary Biology Research Programme, Department of Computer Science, University of Helsinki, Helsinki, Finland
⨯
Dovydas Kičiatovas,

Roles Investigation, Methodology, Software, Writing – review & editing

Affiliation Organismal and Evolutionary Biology Research Programme, Department of Computer Science, University of Helsinki, Helsinki, Finland
⨯
Teemu Kuosmanen,

Roles Investigation, Methodology, Writing – review & editing

Affiliation Organismal and Evolutionary Biology Research Programme, Department of Computer Science, University of Helsinki, Helsinki, Finland

https://orcid.org/0000-0002-8724-5048

⨯
Mabel Vidal,

Roles Investigation, Writing – review & editing

Affiliation Department of Computer Science, Universidad de Concepción, Concepción, Chile

https://orcid.org/0000-0002-0800-1353

⨯
Guillermo Cabrera-Vives,

Roles Investigation, Writing – review & editing

Affiliations Department of Computer Science, Universidad de Concepción, Concepción, Chile, Data Science Unit, Universidad de Concepción, Concepción, Chile
⨯
Johannes Cairns,

Roles Investigation, Writing – review & editing

Affiliation Organismal and Evolutionary Biology Research Programme, Department of Computer Science, University of Helsinki, Helsinki, Finland
⨯
Jonas Warringer,

Roles Investigation, Writing – review & editing

Affiliation Department of Chemistry and Molecular Biology, University of Gothenburg, Göteborg, Sweden
⨯
Ville Mustonen

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Supervision, Writing – review & editing

* E-mail: v.mustonen@helsinki.fi

Affiliations Organismal and Evolutionary Biology Research Programme, Department of Computer Science, University of Helsinki, Helsinki, Finland, Institute of Biotechnology, University of Helsinki, Helsinki, Finland

https://orcid.org/0000-0002-7270-1792

⨯

Quantifying massively parallel microbial growth with spatially mediated interactions

Florian Borse,
Dovydas Kičiatovas,
Teemu Kuosmanen,
Mabel Vidal,
Guillermo Cabrera-Vives,
Johannes Cairns,
Jonas Warringer,
Ville Mustonen

Published: July 22, 2024
https://doi.org/10.1371/journal.pcbi.1011585
See the preprint

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