Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models

• Judith A. Bouman ,

  Roles Conceptualization, Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: judith.bouman@unibe.ch (JAB); julien.riou@unisante.ch (JR)

  Affiliations Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland, Multidisciplinary Center for Infectious Diseases, University of Bern, Bern, Switzerland

  https://orcid.org/0000-0003-3781-0675

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• Anthony Hauser,

  Roles Conceptualization, Formal analysis, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland, Institut national de la santé et de la recherche médicale Sorbonne Université (INSERM), Sorbonne Université, Paris, France

  https://orcid.org/0000-0002-7221-1929

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• Simon L. Grimm,

  Roles Methodology, Writing – review & editing

  Affiliations Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland, Center for Space and Habitability, University of Bern, Bern, Switzerland

  https://orcid.org/0000-0002-0632-4407

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• Martin Wohlfender,

  Roles Methodology, Writing – review & editing

  Affiliations Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland, Multidisciplinary Center for Infectious Diseases, University of Bern, Bern, Switzerland

  https://orcid.org/0000-0002-5252-0484

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• Samir Bhatt,

  Roles Conceptualization, Writing – review & editing

  Affiliations MRC Centre for Global Infectious Disease Analysis, Jameel Institute, School of Public Health, Imperial College London, London, United Kingdom, Section of Epidemiology, Department of Public Health, University of Copenhagen, Copenhagen, Denmark

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• Elizaveta Semenova,

  Roles Conceptualization, Writing – review & editing

  Affiliation Department of Epidemiology and Biostatistics, Imperial College London, London, United Kingdom

  https://orcid.org/0000-0002-8271-2575

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• Andrew Gelman,

  Roles Conceptualization, Writing – review & editing

  Affiliations Department of Statistics, Columbia University, New York, New York, United States of America, Department of Political Science, Columbia University, New York, New York, United States of America

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• Christian L. Althaus ,

  Contributed equally to this work with: Christian L. Althaus, Julien Riou

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Supervision, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland, Multidisciplinary Center for Infectious Diseases, University of Bern, Bern, Switzerland

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• Julien Riou

  Contributed equally to this work with: Christian L. Althaus, Julien Riou

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: judith.bouman@unibe.ch (JAB); julien.riou@unisante.ch (JR)

  Affiliation Department of Epidemiology and Health Systems, Unisanté, Center for Primary Care and Public Health & University of Lausanne, Lausanne, Switzerland

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