A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing

• Lucrezia Patruno ,

  Contributed equally to this work with: Lucrezia Patruno, Salvatore Milite

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Current address: University College London Cancer Institute, London, United Kingdom

  Affiliations Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Milan, Italy, Department of Mathematics and Geosciences, Università degli Studi di Trieste, Trieste, Italy

  https://orcid.org/0000-0002-3721-9984

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• Salvatore Milite ,

  Contributed equally to this work with: Lucrezia Patruno, Salvatore Milite

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Mathematics and Geosciences, Università degli Studi di Trieste, Trieste, Italy, Centre for Computational Biology, Human Technopole, Milan, Italy

  https://orcid.org/0000-0002-0156-3636

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• Riccardo Bergamin,

  Roles Methodology, Validation, Writing – original draft

  Affiliation Department of Mathematics and Geosciences, Università degli Studi di Trieste, Trieste, Italy

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• Nicola Calonaci,

  Roles Formal analysis, Validation, Visualization

  Affiliation Department of Mathematics and Geosciences, Università degli Studi di Trieste, Trieste, Italy

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• Alberto D’Onofrio,

  Roles Writing – review & editing

  Affiliation Department of Mathematics and Geosciences, Università degli Studi di Trieste, Trieste, Italy

  https://orcid.org/0000-0002-2190-272X

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• Fabio Anselmi,

  Roles Writing – review & editing

  Affiliation Department of Mathematics and Geosciences, Università degli Studi di Trieste, Trieste, Italy

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• Marco Antoniotti,

  Roles Funding acquisition, Resources, Writing – review & editing

  Affiliations Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Milan, Italy, B4—Bicocca Bioinformatics Biostatistics and Bioimaging Centre, Università degli Studi di Milano-Bicocca, Milan, Italy

  https://orcid.org/0000-0002-2823-6838

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• Alex Graudenzi,

  Roles Funding acquisition, Resources, Visualization, Writing – review & editing

  Affiliations Department of Informatics, Systems and Communication, Università degli Studi di Milano-Bicocca, Milan, Italy, B4—Bicocca Bioinformatics Biostatistics and Bioimaging Centre, Università degli Studi di Milano-Bicocca, Milan, Italy

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• Giulio Caravagna

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: gcaravagna@units.it

  Affiliation Department of Mathematics and Geosciences, Università degli Studi di Trieste, Trieste, Italy

  https://orcid.org/0000-0003-4240-3265

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