VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models

• Guillermo Rangel-Pineros ,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: guillermo.pineros@sund.ku.dk (GRP); rdf@ebi.ac.uk (RDF)

  Affiliations The Globe Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark, Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogota, Colombia, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom

  https://orcid.org/0000-0003-3848-4330

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• Alexandre Almeida,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliations European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom, Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom

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• Martin Beracochea,

  Roles Software, Validation, Writing – review & editing

  Affiliation European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom

  https://orcid.org/0000-0003-3472-3736

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• Ekaterina Sakharova,

  Roles Software, Validation, Writing – review & editing

  Affiliation European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom

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• Manja Marz,

  Roles Validation, Visualization, Writing – review & editing

  Affiliations RNA Bioinformatics, Friedrich Schiller University, Jena, Germany, European Virus Bioinformatics Center, Friedrich Schiller University, Jena, Germany

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• Alejandro Reyes Muñoz,

  Roles Conceptualization, Methodology, Project administration, Supervision, Writing – review & editing

  Affiliation Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogota, Colombia

  https://orcid.org/0000-0003-2907-3265

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• Martin Hölzer,

  Roles Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft

  Affiliations European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom, European Virus Bioinformatics Center, Friedrich Schiller University, Jena, Germany, Methodology and Research Infrastructure, Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany

  https://orcid.org/0000-0001-7090-8717

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• Robert D. Finn

  Roles Conceptualization, Investigation, Methodology, Project administration, Supervision, Writing – review & editing

  * E-mail: guillermo.pineros@sund.ku.dk (GRP); rdf@ebi.ac.uk (RDF)

  Affiliation European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom

  https://orcid.org/0000-0001-8626-2148

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