DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction

• Chaoyue Sun,

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Electrical and Computer Engineering, Herbert Wertheim College of Engineering, University of Florida, Gainesville, Florida, United States of America

  https://orcid.org/0000-0003-0913-5668

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• Ruogu Fang,

  Roles Resources, Supervision, Writing – review & editing

  Affiliations Department of Electrical and Computer Engineering, Herbert Wertheim College of Engineering, University of Florida, Gainesville, Florida, United States of America, J. Crayton Pruitt Family Department of Biomedical Engineering, Herbert Wertheim College of Engineering, University of Florida, Gainesville, Florida, United States of America, Center for Cognitive Aging and Memory, McKnight Brain Institute, University of Florida, Gainesville, Florida, United States of America

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• Marco Salemi,

  Roles Funding acquisition, Resources, Writing – review & editing

  Affiliations Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, Florida, United States of America, Emerging Pathogens Institute, University of Florida, Gainesville, Florida, United States of America

  https://orcid.org/0000-0003-0136-2102

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• Mattia Prosperi ,

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: m.prosperi@ufl.edu (MP); brittany.magalis@louisville.edu (BRM)

  Affiliations Emerging Pathogens Institute, University of Florida, Gainesville, Florida, United States of America, Department of Epidemiology, University of Florida, Gainesville, Florida, United States of America

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• Brittany Rife Magalis

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: m.prosperi@ufl.edu (MP); brittany.magalis@louisville.edu (BRM)

  Current address: Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, Kentucky, United States of America

  Affiliations Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, Florida, United States of America, Emerging Pathogens Institute, University of Florida, Gainesville, Florida, United States of America

  https://orcid.org/0000-0001-6088-4651

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