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Open Access
Peer-reviewed
Research Article
Predicting the target landscape of kinase inhibitors using 3D convolutional neural networks
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Georgi K. Kanev,
Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
Affiliations Division of Medicinal Chemistry, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Vrije Universiteit Amsterdam, Amsterdam, The Netherlands, Department of Neurosurgery, Amsterdam University Medical Centers, Cancer Center Amsterdam, Brain Tumor Center Amsterdam, Amsterdam, The Netherlands
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Yaran Zhang,
Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Writing – review & editing
Affiliation Department of Neurosurgery, Amsterdam University Medical Centers, Cancer Center Amsterdam, Brain Tumor Center Amsterdam, Amsterdam, The Netherlands
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Albert J. Kooistra,
Roles Resources, Writing – review & editing
Affiliations Division of Medicinal Chemistry, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Vrije Universiteit Amsterdam, Amsterdam, The Netherlands, Department of Drug Design and Pharmacology, University of Copenhagen, Copenhagen, Denmark
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Andreas Bender,
Roles Writing – review & editing
Affiliation Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge, United Kingdom
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Rob Leurs,
Roles Writing – review & editing
Affiliation Division of Medicinal Chemistry, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
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David Bailey,
Roles Funding acquisition, Supervision, Writing – review & editing
Affiliations The WINDOW consortium, www.window-consortium.org, IOTA Pharmaceuticals Ltd, St Johns Innovation Centre, Cambridge, United Kingdom
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Thomas Würdinger,
Roles Funding acquisition, Project administration, Supervision, Writing – review & editing
Affiliations Department of Neurosurgery, Amsterdam University Medical Centers, Cancer Center Amsterdam, Brain Tumor Center Amsterdam, Amsterdam, The Netherlands, The WINDOW consortium, www.window-consortium.org
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Chris de Graaf,
Roles Funding acquisition, Supervision, Writing – review & editing
Current address: Heptares Therapeutics, Steinmetz Building, Granta Park, Great Abington, Cambridge, United Kingdom
Affiliation Division of Medicinal Chemistry, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
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Iwan J. P. de Esch,
Roles Formal analysis, Project administration, Supervision, Writing – review & editing
Affiliation Division of Medicinal Chemistry, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
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Bart A. Westerman
Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Validation, Writing – original draft, Writing – review & editing
* E-mail: a.westerman@amsterdamumc.nl
Affiliations Department of Neurosurgery, Amsterdam University Medical Centers, Cancer Center Amsterdam, Brain Tumor Center Amsterdam, Amsterdam, The Netherlands, The WINDOW consortium, www.window-consortium.org
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Predicting the target landscape of kinase inhibitors using 3D convolutional neural networks
- Georgi K. Kanev,
- Yaran Zhang,
- Albert J. Kooistra,
- Andreas Bender,
- Rob Leurs,
- David Bailey,
- Thomas Würdinger,
- Chris de Graaf,
- Iwan J. P. de Esch,
- Bart A. Westerman
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- Published: September 5, 2023
- https://doi.org/10.1371/journal.pcbi.1011301