BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale

• Tyler W. H. Backman,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Biofuels and Bioproducts Division, Joint BioEnergy Institute, Emeryville, California, United States of America

  https://orcid.org/0000-0002-6056-353X

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• Christina Schenk,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, BCAM, Basque Center for Applied Mathematics, Bilbao, Spain, DOE Agile BioFoundry, Emeryville, California, United States of America

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• Tijana Radivojevic,

  Roles Conceptualization, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Biofuels and Bioproducts Division, Joint BioEnergy Institute, Emeryville, California, United States of America, DOE Agile BioFoundry, Emeryville, California, United States of America

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• David Ando,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization

  Affiliations Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Biofuels and Bioproducts Division, Joint BioEnergy Institute, Emeryville, California, United States of America

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• Jahnavi Singh,

  Roles Software

  Affiliation Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, California, United States of America

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• Jeffrey J. Czajka,

  Roles Software, Writing – review & editing

  Affiliation Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri, United States of America

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• Zak Costello,

  Roles Methodology

  Affiliations Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Biofuels and Bioproducts Division, Joint BioEnergy Institute, Emeryville, California, United States of America, DOE Agile BioFoundry, Emeryville, California, United States of America

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• Jay D. Keasling,

  Roles Conceptualization, Funding acquisition, Project administration, Resources

  Affiliations Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Biofuels and Bioproducts Division, Joint BioEnergy Institute, Emeryville, California, United States of America, Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California, United States of America, Department of Bioengineering, University of California, Berkeley, California, United States of America, QB3 Institute, University of California, Berkeley, California, United States of America, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Copenhagen, Denmark, Center for Synthetic Biochemistry, Institute for Synthetic Biology, Shenzhen Institutes for Advanced Technologies, Shenzhen, China

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• Yinjie Tang,

  Roles Supervision, Writing – review & editing

  Affiliation Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri, United States of America

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• Elena Akhmatskaya,

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  Affiliations Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, BCAM, Basque Center for Applied Mathematics, Bilbao, Spain, IKERBASQUE, Basque Foundation for Science, Bilbao, Spain

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• Hector Garcia Martin

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: hgmartin@lbl.gov

  Affiliations Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Biofuels and Bioproducts Division, Joint BioEnergy Institute, Emeryville, California, United States of America, BCAM, Basque Center for Applied Mathematics, Bilbao, Spain, DOE Agile BioFoundry, Emeryville, California, United States of America

  https://orcid.org/0000-0002-4556-9685

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