maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks

• Tareian A. Cazares,

  Roles Data curation, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Immunology Graduate Program, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America

  https://orcid.org/0000-0003-4624-6156

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• Faiz W. Rizvi,

  Roles Data curation, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Systems Biology and Physiology Graduate Program, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America

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• Balaji Iyer,

  Roles Investigation, Methodology, Software, Validation

  Affiliations Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America, Department of Electrical Engineering and Computer Science, University of Cincinnati, Cincinnati, Ohio, United States of America

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• Xiaoting Chen,

  Roles Investigation, Methodology, Software, Validation, Visualization, Writing – review & editing

  Affiliation The Center for Autoimmune Genetics and Etiology (CAGE), Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America

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• Michael Kotliar,

  Roles Data curation, Software

  Affiliation Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America

  https://orcid.org/0000-0002-6486-3898

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• Anthony T. Bejjani,

  Roles Investigation, Validation

  Affiliation Molecular and Developmental Biology Graduate Program, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America

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• Joseph A. Wayman,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Division of Immunobiology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America

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• Omer Donmez,

  Roles Investigation

  Affiliation The Center for Autoimmune Genetics and Etiology (CAGE), Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America

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• Benjamin Wronowski,

  Roles Investigation

  Affiliation Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America

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• Sreeja Parameswaran,

  Roles Data curation

  Affiliation The Center for Autoimmune Genetics and Etiology (CAGE), Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America

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• Leah C. Kottyan,

  Roles Data curation, Funding acquisition, Supervision, Writing – review & editing

  Affiliations The Center for Autoimmune Genetics and Etiology (CAGE), Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America, Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America, Division of Human Genetics, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America

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• Artem Barski,

  Roles Funding acquisition, Supervision, Writing – review & editing

  Affiliations Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America, Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America, Division of Human Genetics, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America

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• Matthew T. Weirauch,

  Roles Data curation, Funding acquisition, Supervision, Writing – review & editing

  Affiliations Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America, The Center for Autoimmune Genetics and Etiology (CAGE), Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America, Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America, Division of Human Genetics, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America, Division of Developmental Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America

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• V. B. Surya Prasath,

  Roles Funding acquisition, Methodology, Supervision, Writing – review & editing

  Affiliations Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America, Department of Electrical Engineering and Computer Science, University of Cincinnati, Cincinnati, Ohio, United States of America, Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America

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• Emily R. Miraldi

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Software, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: emily.miraldi@cchmc.org

  Affiliations Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America, Department of Electrical Engineering and Computer Science, University of Cincinnati, Cincinnati, Ohio, United States of America, Division of Immunobiology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, United States of America, Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America

  https://orcid.org/0000-0002-0232-3116

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