Modeling the sequence dependence of differential antibody binding in the immune response to infectious disease

Robayet Chowdhury; Alexander T. Taguchi; Laimonas Kelbauskas; Phillip Stafford; Chris Diehnelt; Zhan-Gong Zhao; Phillip C. Williamson; Valerie Green; Neal W. Woodbury

doi:10.1371/journal.pcbi.1010773

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Open Access

Peer-reviewed

Research Article

Modeling the sequence dependence of differential antibody binding in the immune response to infectious disease

Robayet Chowdhury,

Roles Conceptualization, Data curation, Formal analysis, Visualization, Writing – original draft

Affiliations Center for Innovations in Medicine, Biodesign Institute, Arizona State University, Tempe, Arizona, United States of America, School of Molecular Sciences, Arizona State University, Tempe, Arizona, United States of America
⨯
Alexander T. Taguchi,

Roles Formal analysis, Methodology, Software

Affiliation iBio Inc., San Diego, California, United States of America
⨯
Laimonas Kelbauskas,

Roles Data curation, Investigation, Methodology, Supervision, Writing – review & editing

Affiliation Center for Innovations in Medicine, Biodesign Institute, Arizona State University, Tempe, Arizona, United States of America

https://orcid.org/0000-0002-9035-1642

⨯
Phillip Stafford,

Roles Conceptualization, Methodology

Affiliation Center for Innovations in Medicine, Biodesign Institute, Arizona State University, Tempe, Arizona, United States of America
⨯
Chris Diehnelt,

Roles Conceptualization, Formal analysis, Investigation

Affiliation Center for Innovations in Medicine, Biodesign Institute, Arizona State University, Tempe, Arizona, United States of America
⨯
Zhan-Gong Zhao,

Roles Data curation, Formal analysis

Affiliation Center for Innovations in Medicine, Biodesign Institute, Arizona State University, Tempe, Arizona, United States of America
⨯
Phillip C. Williamson,

Roles Resources

Affiliation Creative Testing Solutions, Tempe, Arizona, United States of America
⨯
Valerie Green,

Roles Resources

Affiliation Creative Testing Solutions, Tempe, Arizona, United States of America
⨯
Neal W. Woodbury

Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

* E-mail: nwoodbury@asu.edu

Affiliations Center for Innovations in Medicine, Biodesign Institute, Arizona State University, Tempe, Arizona, United States of America, School of Molecular Sciences, Arizona State University, Tempe, Arizona, United States of America
⨯

Modeling the sequence dependence of differential antibody binding in the immune response to infectious disease

Robayet Chowdhury,
Alexander T. Taguchi,
Laimonas Kelbauskas,
Phillip Stafford,
Chris Diehnelt,
Zhan-Gong Zhao,
Phillip C. Williamson,
Valerie Green,
Neal W. Woodbury

Published: June 20, 2023
https://doi.org/10.1371/journal.pcbi.1010773

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Neural networks
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Antibodies
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Protein sequencing
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Binding analysis
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Immune response
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Infectious diseases
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West Nile virus
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Proteomes
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