CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data

Zubair Lalani; Gillian Chu; Silas Hsu; Shaw Kagawa; Michael Xiang; Simone Zaccaria; Mohammed El-Kebir

doi:10.1371/journal.pcbi.1010614

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Open Access

Peer-reviewed

Research Article

CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data

Zubair Lalani ,

Contributed equally to this work with: Zubair Lalani, Gillian Chu

Roles Methodology, Software, Visualization, Writing – original draft

Affiliation Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America
⨯
Gillian Chu ,

Contributed equally to this work with: Zubair Lalani, Gillian Chu

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Writing – original draft, Writing – review & editing

Affiliation Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America

https://orcid.org/0000-0003-2205-730X

⨯
Silas Hsu,

Roles Formal analysis, Methodology, Writing – original draft

Affiliation Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America
⨯
Shaw Kagawa,

Roles Methodology, Writing – original draft

Affiliation Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America
⨯
Michael Xiang,

Roles Methodology, Writing – original draft

Affiliation Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America
⨯
Simone Zaccaria ,

Roles Formal analysis, Funding acquisition, Investigation, Supervision, Validation, Writing – original draft, Writing – review & editing

* E-mail: s.zaccaria@ucl.ac.uk (SZ); melkebir@illinois.edu (MEK)

Affiliations Computational Cancer Genomics Research Group, University College London Cancer Institute, London, United Kingdom, Cancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London, United Kingdom
⨯
Mohammed El-Kebir

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Project administration, Supervision, Writing – original draft, Writing – review & editing

* E-mail: s.zaccaria@ucl.ac.uk (SZ); melkebir@illinois.edu (MEK)

Affiliations Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America, Cancer Center at Illinois, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America

https://orcid.org/0000-0002-1468-2407

⨯

CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data

Zubair Lalani,
Gillian Chu,
Silas Hsu,
Shaw Kagawa,
Michael Xiang,
Simone Zaccaria,
Mohammed El-Kebir

Published: October 13, 2022
https://doi.org/10.1371/journal.pcbi.1010614

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