HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data

• Evangelos A. Dimopoulos ,

  Contributed equally to this work with: Evangelos A. Dimopoulos, Alberto Carmagnini

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – original draft

  * E-mail: ea.dimopoulos@gmail.com (EAD); laurent.frantz@lmu.de (LAFF); evan.irvingpease@gmail.com (EKL-P)

  Affiliation The Palaeogenomics and Bio-archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, United Kingdom

  https://orcid.org/0000-0002-8508-704X

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• Alberto Carmagnini ,

  Contributed equally to this work with: Evangelos A. Dimopoulos, Alberto Carmagnini

  Roles Conceptualization, Formal analysis, Methodology, Validation, Writing – original draft

  Affiliations Palaeogenomics Group, Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, Ludwig Maximilian University, Munich, Germany, School of Biological and Behavioural Sciences, Queen Mary University of London, London, United Kingdom

  https://orcid.org/0000-0002-5215-4269

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• Irina M. Velsko,

  Roles Conceptualization, Data curation, Formal analysis, Supervision, Writing – review & editing

  Affiliation Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Jena, Germany

  https://orcid.org/0000-0001-9810-9917

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• Christina Warinner,

  Roles Conceptualization, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Jena, Germany, Department of Anthropology, Harvard University, Cambridge, United States of America

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• Greger Larson,

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation The Palaeogenomics and Bio-archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, United Kingdom

  https://orcid.org/0000-0002-4092-0392

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• Laurent A. F. Frantz ,

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: ea.dimopoulos@gmail.com (EAD); laurent.frantz@lmu.de (LAFF); evan.irvingpease@gmail.com (EKL-P)

  ¶‡ These authors co-supervised this work.

  Affiliations Palaeogenomics Group, Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, Ludwig Maximilian University, Munich, Germany, School of Biological and Behavioural Sciences, Queen Mary University of London, London, United Kingdom

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• Evan K. Irving-Pease

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: ea.dimopoulos@gmail.com (EAD); laurent.frantz@lmu.de (LAFF); evan.irvingpease@gmail.com (EKL-P)

  ¶‡ These authors co-supervised this work.

  Affiliations The Palaeogenomics and Bio-archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, United Kingdom, Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark

  https://orcid.org/0000-0003-1940-2192

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