Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks

• Takaki Yamamoto ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: yamamototakaki1212@gmail.com (TY); kyogo.kawaguchi@riken.jp (KK)

  Affiliation Nonequilibrium Physics of Living Matter RIKEN Hakubi Research Team, RIKEN Center for Biosystems Dynamics Research, Kobe, Japan

  https://orcid.org/0000-0002-4321-5269

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• Katie Cockburn,

  Roles Data curation, Funding acquisition, Investigation, Writing – review & editing

  Affiliations Department of Genetics, Yale School of Medicine, New Haven, Connecticut, United States of America, Department of Biochemistry and Rosalind & Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, Canada

  https://orcid.org/0000-0002-2997-0153

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• Valentina Greco,

  Roles Data curation, Funding acquisition, Investigation, Writing – review & editing

  Affiliations Department of Genetics, Yale School of Medicine, New Haven, Connecticut, United States of America, Departments of Cell Biology and Dermatology, Yale Stem Cell Center, Yale Cancer Center, Yale School of Medicine, New Haven, Connecticut, United States of America

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• Kyogo Kawaguchi

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: yamamototakaki1212@gmail.com (TY); kyogo.kawaguchi@riken.jp (KK)

  Affiliations Nonequilibrium Physics of Living Matter RIKEN Hakubi Research Team, RIKEN Center for Biosystems Dynamics Research, Kobe, Japan, RIKEN Cluster for Pioneering Research, Kobe, Japan, Universal Biology Institute, The University of Tokyo, Tokyo, Japan

  https://orcid.org/0000-0001-9395-9875

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