CINS: Cell Interaction Network inference from Single cell expression data

• Ye Yuan,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China, Shanghai, China, Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

  https://orcid.org/0000-0002-4270-8002

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• Carlos Cosme Jr.,

  Roles Data curation, Formal analysis, Methodology, Resources, Writing – original draft, Writing – review & editing

  Affiliation Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America

  https://orcid.org/0000-0002-2684-2615

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• Taylor Sterling Adams,

  Roles Data curation, Investigation, Methodology, Resources

  Affiliation Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America

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• Jonas Schupp,

  Roles Data curation, Methodology, Resources

  Affiliation Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America

  https://orcid.org/0000-0002-7714-8076

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• Koji Sakamoto,

  Roles Data curation, Methodology, Resources

  Affiliation Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America

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• Nikos Xylourgidis,

  Roles Data curation, Methodology, Resources

  Affiliation Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America

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• Matthew Ruffalo,

  Roles Conceptualization, Methodology, Software

  Affiliation Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

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• Jiachen Li,

  Roles Formal analysis, Methodology, Software, Writing – review & editing

  Affiliation Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China, Shanghai, China

  https://orcid.org/0000-0001-9137-6262

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• Naftali Kaminski,

  Roles Conceptualization, Funding acquisition, Supervision, Writing – original draft, Writing – review & editing

  Affiliation Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America

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• Ziv Bar-Joseph

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: zivbj@cs.cmu.edu

  Affiliations Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America, Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

  https://orcid.org/0000-0003-3430-6051

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