-
Loading metrics
Open Access
Peer-reviewed
Research Article
scAmpi—A versatile pipeline for single-cell RNA-seq analysis from basics to clinics
-
Anne Bertolini ,
Roles Conceptualization, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing
¶‡ These authors share first authorship on this work.
Affiliations ETH Zurich, NEXUS Personalized Health Technologies, Zurich, Switzerland, SIB Swiss Institute of Bioinformatics, Zurich, Switzerland
⨯ -
Michael Prummer ,
Roles Conceptualization, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing
¶‡ These authors share first authorship on this work.
Affiliations ETH Zurich, NEXUS Personalized Health Technologies, Zurich, Switzerland, SIB Swiss Institute of Bioinformatics, Zurich, Switzerland
⨯ -
Mustafa Anil Tuncel,
Roles Software, Writing – review & editing
Affiliation ETH Zurich, Department of Biosystems Science and Engineering, Basel, Switzerland
⨯ -
Ulrike Menzel,
Roles Methodology, Writing – review & editing
Affiliation ETH Zurich, Department of Biosystems Science and Engineering, Basel, Switzerland
⨯ -
María Lourdes Rosano-González,
Roles Software, Writing – review & editing
Affiliations ETH Zurich, NEXUS Personalized Health Technologies, Zurich, Switzerland, SIB Swiss Institute of Bioinformatics, Zurich, Switzerland
⨯ -
Jack Kuipers,
Roles Conceptualization, Methodology, Supervision, Writing – review & editing
Affiliations SIB Swiss Institute of Bioinformatics, Zurich, Switzerland, ETH Zurich, Department of Biosystems Science and Engineering, Basel, Switzerland
⨯ -
Daniel Johannes Stekhoven,
Roles Funding acquisition, Resources, Writing – review & editing
Affiliations ETH Zurich, NEXUS Personalized Health Technologies, Zurich, Switzerland, SIB Swiss Institute of Bioinformatics, Zurich, Switzerland
⨯ -
Tumor Profiler consortium ,
¶Membership of Tumor Profiler consortium is provided in the Acknowledgments.
⨯ -
Niko Beerenwinkel,
Roles Conceptualization, Funding acquisition, Project administration, Resources, Writing – review & editing
Affiliations SIB Swiss Institute of Bioinformatics, Zurich, Switzerland, ETH Zurich, Department of Biosystems Science and Engineering, Basel, Switzerland
⨯ -
Franziska Singer
Roles Conceptualization, Methodology, Project administration, Software, Supervision, Visualization, Writing – original draft, Writing – review & editing
* E-mail: singer@nexus.ethz.ch
Affiliations ETH Zurich, NEXUS Personalized Health Technologies, Zurich, Switzerland, SIB Swiss Institute of Bioinformatics, Zurich, Switzerland
⨯
scAmpi—A versatile pipeline for single-cell RNA-seq analysis from basics to clinics
- Anne Bertolini,
- Michael Prummer,
- Mustafa Anil Tuncel,
- Ulrike Menzel,
- María Lourdes Rosano-González,
- Jack Kuipers,
- Daniel Johannes Stekhoven,
- Tumor Profiler consortium,
- Niko Beerenwinkel,
- Franziska Singer
![PLOS](/resource/img/logo-plos.png)
-
- Published: June 3, 2022
- https://doi.org/10.1371/journal.pcbi.1010097