phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets

• Nicola De Maio ,

  Contributed equally to this work with: Nicola De Maio, William Boulton

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: demaio@ebi.ac.uk

  Affiliation European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, United Kingdom

  https://orcid.org/0000-0002-1776-8564

  ⨯
• William Boulton ,

  Contributed equally to this work with: Nicola De Maio, William Boulton

  Roles Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Current address: School of Computing Sciences, University of East Anglia, Norwich, United Kingdom

  Affiliation European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, United Kingdom

  https://orcid.org/0000-0002-8258-4673

  ⨯
• Lukas Weilguny,

  Roles Software, Writing – review & editing

  Affiliation European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, United Kingdom

  https://orcid.org/0000-0001-6459-0431

  ⨯
• Conor R. Walker,

  Roles Software, Writing – review & editing

  Current address: New York Genome Center, New York, New York, United States of America

  Affiliations European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, United Kingdom, Department of Genetics, University of Cambridge, Cambridge, United Kingdom

  https://orcid.org/0000-0001-5617-5086

  ⨯
• Yatish Turakhia,

  Roles Writing – review & editing

  Affiliation Department of Electrical and Computer Engineering, University of California San Diego, San Diego, California, United States of America

  ⨯
• Russell Corbett-Detig,

  Roles Writing – review & editing

  Affiliations Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America, Genomics Institute, University of California Santa Cruz, Santa Cruz, California, United States of America

  https://orcid.org/0000-0001-6535-2478

  ⨯
• Nick Goldman

  Roles Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliation European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, United Kingdom

  https://orcid.org/0000-0001-8486-2211

  ⨯