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Whole-genome sequencing and gene sharing network analysis powered by machine learning identifies antibiotic resistance sharing between animals, humans and environment in livestock farming
- Zixin Peng ,
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Alexandre Maciel-Guerra ,
Roles Conceptualization, Data curation, Formal analysis, Visualization, Writing – original draft, Writing – review & editing
¶‡ These authors are co-first authors on this work.
Affiliation School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, United Kingdom
⨯ -
Michelle Baker ,
Roles Conceptualization, Data curation, Formal analysis, Visualization, Writing – original draft, Writing – review & editing
¶‡ These authors are co-first authors on this work.
Affiliation School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, United Kingdom
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Xibin Zhang ,
Roles Conceptualization, Investigation, Methodology
¶‡ These authors are co-first authors on this work.
Affiliation Qingdao Tian run Food Co., Ltd, New Hope, Beijing, People’s Republic of China
⨯ - Yue Hu,
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Wei Wang,
Roles Investigation
Affiliation NHC Key Laboratory of Food Safety Risk Assessment, Chinese Academy of Medical Science Research Unit (2019RU014), China National Center for Food Safety Risk Assessment, Beijing, People’s Republic of China
⨯ - Jia Rong,
- Jing Zhang,
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Ning Xue,
Roles Formal analysis, Visualization
Affiliation School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, United Kingdom
⨯ - Paul Barrow,
- David Renney,
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Dov Stekel,
Roles Conceptualization
Affiliation School of Biosciences, University of Nottingham, Sutton Bonington, United Kingdom
⨯ -
Paul Williams,
Roles Writing – review & editing
Affiliation Biodiscovery Institute and School of Life Sciences, University of Nottingham, Nottingham, United Kingdom
⨯ - Longhai Liu,
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Junshi Chen,
Roles Conceptualization, Supervision
Affiliation NHC Key Laboratory of Food Safety Risk Assessment, Chinese Academy of Medical Science Research Unit (2019RU014), China National Center for Food Safety Risk Assessment, Beijing, People’s Republic of China
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Fengqin Li ,
Roles Conceptualization, Methodology, Supervision
* E-mail: lifengqin@cfsa.net.cn (FL); tania.dottorini@nottingham.ac.uk (TD)
Affiliation NHC Key Laboratory of Food Safety Risk Assessment, Chinese Academy of Medical Science Research Unit (2019RU014), China National Center for Food Safety Risk Assessment, Beijing, People’s Republic of China
⨯ - [ ... ],
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Tania Dottorini
Roles Conceptualization, Funding acquisition, Methodology, Supervision, Writing – original draft, Writing – review & editing
* E-mail: lifengqin@cfsa.net.cn (FL); tania.dottorini@nottingham.ac.uk (TD)
Affiliation School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, United Kingdom
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https://orcid.org/0000-0003-1396-9438
Whole-genome sequencing and gene sharing network analysis powered by machine learning identifies antibiotic resistance sharing between animals, humans and environment in livestock farming
- Zixin Peng,
- Alexandre Maciel-Guerra,
- Michelle Baker,
- Xibin Zhang,
- Yue Hu,
- Wei Wang,
- Jia Rong,
- Jing Zhang,
- Ning Xue,
- Paul Barrow
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- Published: March 25, 2022
- https://doi.org/10.1371/journal.pcbi.1010018