Bayesian data assimilation for estimating instantaneous reproduction numbers during epidemics: Applications to COVID-19

• Xian Yang ,

  Contributed equally to this work with: Xian Yang, Shuo Wang, Yuting Xing

  Roles Formal analysis, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliations Department of Computer Science, Hong Kong Baptist University, Hong Kong Special Administrative Region, China, Data Science Institute, Imperial College London, London, United Kingdom

  https://orcid.org/0000-0002-1496-8923

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• Shuo Wang ,

  Contributed equally to this work with: Xian Yang, Shuo Wang, Yuting Xing

  Roles Conceptualization, Formal analysis, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Data Science Institute, Imperial College London, London, United Kingdom, Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, Shanghai, China, Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Shanghai, China

  https://orcid.org/0000-0002-2947-8783

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• Yuting Xing ,

  Contributed equally to this work with: Xian Yang, Shuo Wang, Yuting Xing

  Roles Data curation, Software, Writing – review & editing

  Affiliation Data Science Institute, Imperial College London, London, United Kingdom

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• Ling Li,

  Roles Conceptualization, Writing – review & editing

  Affiliation School of Computing, University of Kent, Kent, United Kingdom

  https://orcid.org/0000-0002-4026-0216

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• Richard Yi Da Xu,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney, Australia

  https://orcid.org/0000-0003-2080-4762

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• Karl J. Friston,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Institute of Neurology, University College London, London, United Kingdom

  https://orcid.org/0000-0001-7984-8909

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• Yike Guo

  Roles Conceptualization, Methodology, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: yikeguo@hkbu.edu.hk

  Affiliations Department of Computer Science, Hong Kong Baptist University, Hong Kong Special Administrative Region, China, Data Science Institute, Imperial College London, London, United Kingdom

  https://orcid.org/0000-0002-3075-2161

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